I've noticed that if you install from the nvidia installer from nvidia's webiste, it sets up libglx.so as a symbolic link (eg /usr/lib/xorg/modules/extensions/libglx.so -> libglx.so.256.35), but xserver package upgrades will overwrite this link with a non-nvidia library. This then stops 3d effects from working until you reinstall the nvidia drivers (or manually correct the link). Could the same thing be happening to the jockey installation?
I've noticed that if you install from the nvidia installer from nvidia's webiste, it sets up libglx.so as a symbolic link (eg /usr/lib/ xorg/modules/ extensions/ libglx. so -> libglx.so.256.35), but xserver package upgrades will overwrite this link with a non-nvidia library. This then stops 3d effects from working until you reinstall the nvidia drivers (or manually correct the link). Could the same thing be happening to the jockey installation?