Comment 11 for bug 641561

@Hernando: did you upgrade your indicator-appmenu as well. There is a patch to prevent closed window to still be considered by appmenu, and without the patch you may still see the issue, even if the unity side is fixed.

You need to upgrade to the latest indicator-appmenu (0.0.13) or if you're on 0.0.12, check the changelog for a mention of a fix for this other bug: https://bugs.edge.launchpad.net/indicator-appmenu/+bug/645355