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0e1f616
(Get the code!)
Ok, I am doing an experiment. So far it worked... I went to BIOS and changed from SATA mode, to AHCI mode. My BIOS is an ASUS Bios, M3A78-EM. There is SATA Configuration entry right in the first BIOS screen. Then it gives you three modes:
SATA
RAID
AHCI
It was on SATA all this time, and I have changed to AHCI.
So far problem is gone.
People having this problem, please do the same to see if that narrows down the cause of this issue. (Particurlarly caused by kernel ata drivers).