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0e1f616
(Get the code!)
I have the exact same problem as oc666. I run a dual monitor setup on a Radeon HD 3600. I've disabled RANDR, which didn't help. Like for oc666, my blinking only happens on keyboard input.
After reading through the comments here I tried killing krunner, and in the ten minutes of typing I've been doing since then I can confirm that there has been no blinking whatsoever.